eBCSgen

eBSCgen is a tool for development and analysis of models written in Biochemical Space Language (BCSL).

The tool is deployed online as a part of BioDivine Galaxy toolset.

For more information about the tool, see Wiki.

To get started with the usage of Galaxy Platform and eBCSgen, we recommend this tutorial.

Installation

Conda

Install eBCSgen from Bioconda with:

# install eBCSgen in a new virtual environment to avoid dependency clashes
conda create --name eBCSgen python=3.9
conda activate eBCSgen
conda install --channel bioconda --channel conda-forge eBCSgen

Docker

You can also use prebuild docker image.

Galaxy

eBCSgen is also available as a series of Galaxy tools available in the main toolshed.

Developer Documentation

Setup

Create your development environment using the provided script via conda to install all required dependencies.

Contributing

We appreciate contributions - feel free to open an issue on our repository, create your own fork, work on the problem and post a PR. Please adhere to the versioning.

Testing

All functionality is tested with the pytest framework.